RetrogeneDB ID: | retro_ggor_1207 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 15:51878582..51879166(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ASRLSARRRPRCNFLRSSRIRVHPTPAASTMP-PKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSP |
.S.L.ARRRP.CNFL.SSRIRVHPTPAASTMP..KFDP.EIKVVYLRCTGGEVGATSALAPKIG.LGLSP | |
Retrocopy | SSQLLARRRPTCNFLWSSRIRVHPTPAASTMP<VKFDPREIKVVYLRCTGGEVGATSALAPKIGRLGLSP |
Parental | KKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEI |
KKVGDDIAKATG..KGLRITVKLT.QNRQAQIEVVPSASALIIKAL.EPPR.RKKQKNIKHSGNITFDEI | |
Retrocopy | KKVGDDIAKATGYRKGLRITVKLTTQNRQAQIEVVPSASALIIKALREPPRERKKQKNIKHSGNITFDEI |
Parental | VNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
VNIARQMRH.SLARELSGTIKEILGTAQSVGCNVDG.HPHDIIDDINSGAVECPAS | |
Retrocopy | VNIARQMRH*SLARELSGTIKEILGTAQSVGCNVDGQHPHDIIDDINSGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .12 RPM | 50 .82 RPM |
SRP007412_heart | 0 .09 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .16 RPM | 164 .33 RPM |
SRP007412_liver | 0 .05 RPM | 168 .45 RPM |
SRP007412_testis | 0 .10 RPM | 81 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1592 |
Pongo abelii | retro_pabe_1309 |