RetrogeneDB ID:

retro_tsyr_358

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_10280:39668..40038(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS25
Ensembl ID:ENSTSYG00000005422
Aliases:None
Description:ribosomal protein S25 [Source:HGNC Symbol;Acc:10413]


Retrocopy-Parental alignment summary:






>retro_tsyr_358
ATGCCGCCCAAGGATGACAAGAAGAAGAAAGATGCCGGAAAGTCGGCCAAGAAAGACAAAGATCCAGTGAACAAATCTGG
AGGCAAGGCTAAAAAGAAGAAGTGGTCCGAAGGCAAAGTTTGGGACAAGCTTAATAACCTAGTCTTGTTTGACAAAGCCA
CGTATAGACAAACTCTGTAAGGAAGTTCCCAATTACAAGCTTATAACTCCAGCTGTGGTCTCTGAGAGACTGAAGATTCG
CGGTTCTCTGGCCAGGGCAGCCCTTCAGGAGCTCCTTAGTAAAGGTCTTATCAAACTGGTTTCAAAGCACAGAGCTCAAG
TAATTTACACTAGAAATACCAAGGGTGGAGATGCCACAGCTGCTGGTGAA

ORF - retro_tsyr_358 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.77 %
Parental protein coverage: 98.4 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATY-DKLCKEVPNYKLIT
MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWS.GKV.DKLNNLVLFDKATY.DKLCKEVPNYKLIT
RetrocopyMPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSEGKVWDKLNNLVLFDKATY>DKLCKEVPNYKLIT
ParentalPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGE
PAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDA.AAGE
RetrocopyPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDATAAGE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_358 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 100 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000277722 retrocopies
Callithrix jacchus ENSCJAG000000136911 retrocopy
Dasypus novemcinctus ENSDNOG000000078807 retrocopies
Homo sapiens ENSG000001181813 retrocopies
Gorilla gorilla ENSGGOG000000255407 retrocopies
Mus musculus ENSMUSG0000000992715 retrocopies
Oryctolagus cuniculus ENSOCUG0000001725611 retrocopies
Otolemur garnettii ENSOGAG000000072653 retrocopies
Pongo abelii ENSPPYG000000259156 retrocopies
Pan troglodytes ENSPTRG0000000436110 retrocopies
Sorex araneus ENSSARG000000022844 retrocopies
Tupaia belangeri ENSTBEG0000001024416 retrocopies
Tarsius syrichta ENSTSYG00000005422 15 retrocopies



Copyright © RetrogeneDB 2014-2017