RetrogeneDB ID: | retro_ocun_1231 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:43737458..43737817(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSOCUG00000017256 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 61.11 % |
Parental protein coverage: | 97.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | PKDDKKKK-DAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP- |
P..D..KK.D..K..KKDKD..NKS.GK...K....GK..DKL....L.D.A.Y..LCKE.PN.K..T.. | |
Retrocopy | PTKDNSKK<DTRKLIKKDKDLLNKSRGKT*EK*-VRGKFWDKLDDRFLSDTAVYVTLCKEIPNCKPMTQ< |
Parental | AVVSERLKIRGS-LARAALQELLSKGL-IKLVSKHRAQVIYTRNTKGGDAPAAGED |
AVVS.RLKI..S.LARAA.QELL..GL..KLVSK.RA.VIYTRNTKG..APAAGED | |
Retrocopy | AVVSVRLKICSS<LARAAIQELLNRGL<VKLVSKDRARVIYTRNTKGRKAPAAGED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 91 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 219 .64 RPM |
SRP017611_liver | 0 .00 RPM | 69 .44 RPM |