RetrogeneDB ID: | retro_sara_542 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_232130:26129..26495(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSSARG00000002284 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 70.31 % |
Parental protein coverage: | 99.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MPPK-DDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKAT-YDKLCK-EVPNYKL |
MPP..DDKK.KDAGK.AKK.KDPVNKS.GKA.K..WSKGK..DKLN..V.FDKAT..DKLCK.EVP.... | |
Retrocopy | MPPR<DDKKRKDAGKLAKKGKDPVNKSSGKATK--WSKGKGWDKLND*VSFDKAT>HDKLCK>EVPSHRP |
Parental | ITPAVVSERLKIRGSLARAALQELLSKGLIKL-VSKHRAQVIYTRNTKGGDAPAAGED |
..PAVVSE.LKI.G.LARAALQ.LL.KGL.K..VS...AQV.Y.RNTK.GD.PAAGED | |
Retrocopy | VPPAVVSETLKIQGFLARAALQVLLGKGLTKM<VSRPGAQVVYNRNTKTGDGPAAGED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027772 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013691 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007880 | 7 retrocopies | |
Homo sapiens | ENSG00000118181 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000025540 | 7 retrocopies | |
Latimeria chalumnae | ENSLACG00000017531 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000014185 | 3 retrocopies | |
Mus musculus | ENSMUSG00000009927 | 15 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017256 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000007265 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000016194 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000025915 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000004361 | 10 retrocopies | |
Sorex araneus | ENSSARG00000002284 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000010244 | 16 retrocopies | |
Tarsius syrichta | ENSTSYG00000005422 | 15 retrocopies | |
Vicugna pacos | ENSVPAG00000000266 | 4 retrocopies |