RetrogeneDB ID: | retro_ocun_1319 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:107192742..107193115(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000012435 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSOCUG00000017256 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 89.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
M.PKDDKKKKDA.KSAKKDKDPVNKSGGK.KKKKWSKGKVRDKL.NLVLFDKAT...LCKEV.NYKLITP | |
Retrocopy | MLPKDDKKKKDARKSAKKDKDPVNKSGGKTKKKKWSKGKVRDKLKNLVLFDKATFNELCKEVANYKLITP |
Parental | AVVSERLKIRGS-LARAALQELLSKGLIKLVSKHRAQVIYTRNTK-GGDAPAAGEDA |
AVVSERLKIRGS.LARAALQELLS.GL..LVSKHRAQVIYTRNTK.GGDAPAAGEDA | |
Retrocopy | AVVSERLKIRGS<LARAALQELLSTGLNTLVSKHRAQVIYTRNTK<GGDAPAAGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 91 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 219 .64 RPM |
SRP017611_liver | 0 .00 RPM | 69 .44 RPM |