RetrogeneDB ID: | retro_vpac_396 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_156362:604..1333(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSVPAG00000005023 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 96.71 % |
Parental protein coverage: | 98.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQK |
MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQG.ELSNEERNLLSVA.KNVVGAR.SSWRVISS.EQK | |
Retrocopy | MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGPELSNEERNLLSVACKNVVGARPSSWRVISSTEQK |
Parental | TERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNK |
TERNEK.QQMGKE.REKIEAELQDICNDVLELLDKYLIP.ATQPESKVFYLKMKGDYFRYLSEV.SGDNK | |
Retrocopy | TERNEKQQQMGKEDREKIEAELQDICNDVLELLDKYLIPSATQPESKVFYLKMKGDYFRYLSEVVSGDNK |
Parental | QTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNE |
QTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNE | |
Retrocopy | QTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNE |
Parental | ESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE |
ESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE | |
Retrocopy | ESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |