RetrogeneDB ID: | retro_vpac_350 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_1120:257048..257549(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSVPAG00000005865 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 51.72 % |
Parental protein coverage: | 68.85 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | MDKNELVQK-AKLAEQAERYDDMAACMKSVTEQG-AELSNEERNLLSVAYK-NVVGARRSSWRVVSSIE- |
..K..L.QK.AKLA.QA...D..A.CMKSVT.Q..AELS..E.NLL.V.YK.NVV...R...RV.SSI.. | |
Retrocopy | LKKHKLNQK<AKLAKQAKLCDATATCMKSVTGQK<AELSKGETNLL*VIYK>NVVRSCRPF*RVISSIQL |
Parental | QKTEGAEKKQQMAREYREKIETELREICNDVLSLLEKFLIP-NASQAESKVFYLKMKGDYYRYLAEVAAG |
.K.....K......................V...LEKFLIP....QAESKVF.LKMKGDYY.Y.AEVA.G | |
Retrocopy | KKEDAEQKQMTCDSREKVETKLRVHL*QHTVYLFLEKFLIP<SVAQAESKVFNLKMKGDYYCYMAEVAMG |
Parental | DDKKGIVDQSQ-QAYQEAFEISKKEMQPTHPIRL |
.DKKG..DQS..Q..QE.FE.SKKE...TH.I.L | |
Retrocopy | -DKKGNMDQSY<QTDQETFETSKKEV*WTHSITL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |