Parental gene:

ENSCJAG00000001235

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:96002585..96009247(-)


>ENSCJAG00000001235
ATGGGGGGTTTGGTGATTCGCGGGATCAGGAATTTCAACGTAGAAAACCGAGCGGAACGGGAAATCAGCAAGATGAAGCC
CTCTCCCGCTCCCAAGCACCCCTCTACCAACAGCCTCCTACAAAAGCAGATGGGTGTCAATCCAGAAATTGAGGGAGAGA
TTGCCCGTAAAGATGACAAACTACTGTCGTTTCTAAAAGATGTGTATGTTGATTCCAAAGATCCTGTGTCTTCCGTGCAG
GTAAAAGCTGCTGAAACACCTCAAGAGCCAGAGGAATTCAGATTGCCAAAAGGCCAACACTTTGATATGATAAATATTAA
GAGCGTTCCAAAAGGCAAGATTTCTATTGTGGAAGCATTGACACTTCTCAATAATCATAAACTTTATCCAGAAACATGGA
CTGCTGAGAAAATAGCGCAAGAGTACCTTTTAGAACAGAAAGATGTGAATTCCCTTCTTAAATATTTTGTTACTTTTGAA
GTCAAAGTCTTCCCTCCTGAAGACAAGAAAGCAATACAACCAAAATGA

Library Parental gene expression (RPM)
SRP051959_colon 6 .99 RPM
SRP051959_heart 10 .07 RPM
SRP051959_kidney 10 .07 RPM
SRP051959_liver 6 .48 RPM
SRP051959_lung 5 .11 RPM
SRP051959_lymph_node 5 .50 RPM
SRP051959_skeletal_muscle 7 .75 RPM
SRP051959_spleen 6 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003174 ortholog_one2many 1 retrogene
retro_btau_1763,
Choloepus hoffmanni ENSCHOG00000005145 ortholog_one2many 2 retrogenes
retro_chof_2271, retro_chof_891,
Cavia porcellus ENSCPOG00000007618 ortholog_one2many 1 retrogene
retro_cpor_425,
Homo sapiens ENSG00000123545 ortholog_one2many 4 retrogenes
retro_hsap_1494, retro_hsap_2774, retro_hsap_3761, retro_hsap_477,
Gorilla gorilla ENSGGOG00000012070 ortholog_one2many 4 retrogenes
retro_ggor_1147, retro_ggor_1931, retro_ggor_2529, retro_ggor_451,
Microcebus murinus ENSMICG00000015734 ortholog_one2many 1 retrogene
retro_mmur_1624,
Macaca mulatta ENSMMUG00000018843 ortholog_one2many 4 retrogenes
retro_mmul_1717, retro_mmul_2138, retro_mmul_578, retro_mmul_734,
Mus musculus ENSMUSG00000028261 ortholog_one2many 3 retrogenes
retro_mmus_1153, retro_mmus_1290, retro_mmus_3668,
Nomascus leucogenys ENSNLEG00000013568 ortholog_one2many 4 retrogenes
retro_nleu_171, retro_nleu_1716, retro_nleu_678, retro_nleu_890,
Oryctolagus cuniculus ENSOCUG00000002152 ortholog_one2many 1 retrogene
retro_ocun_1162,
Pongo abelii ENSPPYG00000016857 ortholog_one2many 4 retrogenes
retro_pabe_1244, retro_pabe_2241, retro_pabe_257, retro_pabe_3160,
Pan troglodytes ENSPTRG00000018435 ortholog_one2many 4 retrogenes
retro_ptro_1013, retro_ptro_1877, retro_ptro_2552, retro_ptro_358,
Rattus norvegicus ENSRNOG00000007506 ortholog_many2many 3 retrogenes
retro_rnor_1617, retro_rnor_2973, retro_rnor_675,
Tursiops truncatus ENSTTRG00000010911 ortholog_one2many 1 retrogene
retro_ttru_628,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1613 63.55 60.00
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2. retro_cjac_1700 75.57 100.00
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Download FASTA sequences of all ENSCJAG00000001235 retrocopies