RetrogeneDB ID: | retro_pabe_1244 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:45700147..45700630(+) | ||
Located in intron of: | ENSPPYG00000006463 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF4 | ||
Ensembl ID: | ENSPPYG00000016857 | ||
Aliases: | NDUFAF4, HRPAP20 | ||
Description: | NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001126910] |
Percent Identity: | 81.37 % |
Parental protein coverage: | 92. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | ENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDNKLLSLLKDVYVDSKDPVPSLQVQAA |
ENRAEREI..MKPS.APRHPSTNSLL.EQI.LYPE.KGEIARKD.KLLS.LK.VYVDSKDPV.S..V.AA | |
Retrocopy | ENRAEREIGNMKPSLAPRHPSTNSLLPEQINLYPEIKGEIARKDDKLLSFLKYVYVDSKDPVSSV*VKAA |
Parental | ETCQEPKEFRLPKDHHLDMINTKSIPKGKISITEALSLLNNHKLFPETWTAEKIAQEYQLEQKDVNSLLK |
ET.QEPK.FRLPK..H.DMIN.KSIPKGKIS..EAL.L.NNHKL.PET.TAEKIAQEY.LEQKD.NSLLK | |
Retrocopy | ETRQEPKKFRLPKGRHFDMINIKSIPKGKISTVEALTLFNNHKLYPET*TAEKIAQEYHLEQKDMNSLLK |
Parental | YFATFEVEIFPPEDTKAIQSK |
YF.TFEV.IFPPED.KAIQSK | |
Retrocopy | YFVTFEVKIFPPEDKKAIQSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 27 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .19 RPM |
SRP007412_heart | 0 .00 RPM | 17 .16 RPM |
SRP007412_kidney | 0 .03 RPM | 11 .87 RPM |
SRP007412_liver | 0 .00 RPM | 14 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1494 |
Pan troglodytes | retro_ptro_1013 |
Gorilla gorilla | retro_ggor_1147 |
Macaca mulatta | retro_mmul_2138 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |