RetrogeneDB ID: | retro_nleu_1716 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397306.1:10240024..10240545(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF4 | ||
Ensembl ID: | ENSNLEG00000013568 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGALVIRGI-RNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDDKLLSFLKDVY |
M.A.V.RGI.R.F..ENRAEREI..MKP..APRHPST.SLL.EQISLY.E.KGEIARKDDKLLSFLK.VY | |
Retrocopy | MWAAVTRGI<REFQ-ENRAEREIGNMKPCLAPRHPSTDSLLPEQISLYTEIKGEIARKDDKLLSFLKYVY |
Parental | VDSKDPVSSLQVKAAETCQEPQEFRLPKDHHFDMINIKSIPKGKISITEALTLLNNHKLFPETWTAEKIV |
VDSKDPVSS.QVKAAET.QEP.EFRLPK.HHFDMINI.SIPKGKIS..EALTL.NNHKL.PET.TAEKI. | |
Retrocopy | VDSKDPVSSVQVKAAETRQEPKEFRLPKGHHFDMINI*SIPKGKISTVEALTLFNNHKLYPET*TAEKIA |
Parental | QEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIQSK |
QEY.LEQK.VNSLLKYFVTFEV.IFPPED.KAIQSK | |
Retrocopy | QEYHLEQKHVNSLLKYFVTFEVKIFPPEDEKAIQSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |