RetrogeneDB ID: | retro_btau_1763 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:105608948..105609474(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF4 | ||
Ensembl ID: | ENSBTAG00000003174 | ||
Aliases: | NDUFAF4, C9H6ORF66, HRPAP20 | ||
Description: | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 [Source:UniProtKB/Swiss-Prot;Acc:A4FUH5] |
Percent Identity: | 86.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGAAVARAVRNFNLENRAEREISRMKPSPAPRHPSTKNLLLEQMSSHPEIKGEIDRKDDKLLSLLKDVYV |
MG.A.A...RNFNLEN.AE.EISRMKPSP.PRHPSTKNLL.EQMSSHPEIKGEIDRKDDKLLSLLKDVYV | |
Retrocopy | MGPAGACTIRNFNLENQAE*EISRMKPSPTPRHPSTKNLLREQMSSHPEIKGEIDRKDDKLLSLLKDVYV |
Parental | DSQDPVSSLQVKDATARQKPKEFRLPKDHQFDMMDVKNIPKGKISIVEALTLLNNHKLYPDTWTAKKIAE |
DSQDP.SSLQVKDA..RQKPKEFRLPKDHQFDMM.VKNIPKGKISI..ALTLLN.HKLYPDTWTAKKIA. | |
Retrocopy | DSQDPMSSLQVKDAGTRQKPKEFRLPKDHQFDMMNVKNIPKGKISILVALTLLNSHKLYPDTWTAKKIAD |
Parental | EYHLEQQDVNSLLKYFVTFEV-KIFPPEGKKAIESK |
.YHLEQQDVNSLLKYFVTF.V.KIFP..GKKAI..K | |
Retrocopy | KYHLEQQDVNSLLKYFVTF*V>KIFPS*GKKAIQAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 7 .14 RPM |
ERP005899_muscle | 0 .00 RPM | 8 .60 RPM |
SRP017611_brain | 0 .00 RPM | 5 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .59 RPM |
SRP017611_liver | 0 .00 RPM | 4 .00 RPM |
SRP030211_testis | 0 .00 RPM | 3 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy |
retro_btau_1763 ,
|
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |