RetrogeneDB ID: | retro_rnor_2973 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:119686877..119687398(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000047619 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufaf4 | ||
Ensembl ID: | ENSRNOG00000007506 | ||
Aliases: | Ndufaf4, Hrpap20 | ||
Description: | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9NQR8] |
Percent Identity: | 88.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MGARMTRAFRNFNVEKRAEQEISKRKPSMAP-KHPSTRSLLQEHLSQYPEIEEEVSRK-DNKLLSLLRDV |
MGARMTRAFRNFNVEK.AEQ.ISKRKPSMAP..HPST.SLLQEHLSQYPE.EEEVSRK...KLLSLLRDV | |
Retrocopy | MGARMTRAFRNFNVEKQAEQDISKRKPSMAP<QHPSTHSLLQEHLSQYPEMEEEVSRK>NHKLLSLLRDV |
Parental | YVNSKDP-VPSLPVKAIEPQQQPKEFRLPIGDQFDKNIKDIPKGKITVVEALTLLNNHKLSPETWTAEKI |
YV..KD..V.SLPVKAIEPQQ.PKEFRLPIGD.FDKN..DIPKGKITVVEALTLLNNHK.SPET.TAEKI | |
Retrocopy | YVDPKDQ<VSSLPVKAIEPQQEPKEFRLPIGDHFDKNVMDIPKGKITVVEALTLLNNHKVSPETRTAEKI |
Parental | AQEYHLELEDVNSLLKYFVTFEVKIVPPEDRKAIQSK |
AQEYHLEL.DVNSLLKYFVTFEVKIVPPEDRKAIQSK | |
Retrocopy | AQEYHLELKDVNSLLKYFVTFEVKIVPPEDRKAIQSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .01 RPM |
SRP017611_liver | 0 .00 RPM | 12 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies |
retro_rnor_1617, retro_rnor_2973 , retro_rnor_675,
|
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |