RetrogeneDB ID: | retro_mmus_1153 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:118569474..118569783(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufaf4 | ||
Ensembl ID: | ENSMUSG00000028261 | ||
Aliases: | Ndufaf4, 1110007M04Rik, 3000003G13Rik, AW214064 | ||
Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 [Source:MGI Symbol;Acc:MGI:1915743] |
Percent Identity: | 76.42 % |
Parental protein coverage: | 59.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGARVTRALRNFNVEKRAEREISKRKPS-MAPKHPSTRDLLQEHRSQYPEIEEVVSKKDNKLLSLLRDVY |
M.AR.T.A.RNFNVE.RAE..I.KRK.S.MAPKHPST..LLQEH.SQYPEIEE.VS.KDNKLLSL.RDVY | |
Retrocopy | MEARETCAFRNFNVENRAE-QIRKRKLS>MAPKHPSTHGLLQEHLSQYPEIEEEVSRKDNKLLSLIRDVY |
Parental | VDSKDP-VPALPVK-VEPRQEPKEFRLPIGNHFDKN |
VD..DP.VP.LPVK.VEP.QEPKEFRL.IG..FDKN | |
Retrocopy | VDFEDP<VPSLPVKDVEPPQEPKEFRL*IGDYFDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 24 .95 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .58 RPM |
SRP007412_heart | 0 .00 RPM | 39 .22 RPM |
SRP007412_kidney | 0 .02 RPM | 30 .09 RPM |
SRP007412_liver | 0 .00 RPM | 24 .77 RPM |
SRP007412_testis | 0 .00 RPM | 2 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies |
retro_mmus_1153 , retro_mmus_1290, retro_mmus_3668,
|
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |