RetrogeneDB ID: | retro_hsap_1494 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:49448561..49449044(+) | ||
Located in intron of: | ENSG00000156958 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259467 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF4 | ||
Ensembl ID: | ENSG00000123545 | ||
Aliases: | NDUFAF4, C6orf66, HRPAP20, My013, bA22L21.1 | ||
Description: | NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 [Source:HGNC Symbol;Acc:21034] |
Percent Identity: | 86.34 % |
Parental protein coverage: | 92. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEKLLSFLKDVYVDSKDPVSSLQVKAA |
ENRAEREI..MKPS.APRHPST.SLL.EQISLYPE.KGEIARKD.KLLSFLK.V.VDSKDPVSS.Q.KAA | |
Retrocopy | ENRAEREIRNMKPSLAPRHPSTSSLLPEQISLYPEIKGEIARKDDKLLSFLKYVCVDSKDPVSSVQLKAA |
Parental | ETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEALTLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLK |
ET.QEPK.FRLPK.HHFDMINIKSIPKGKIS.VEALTL.NNHKL.PET.TAEKI.QEY.LEQKDVNSLLK | |
Retrocopy | ETRQEPKKFRLPKGHHFDMINIKSIPKGKISTVEALTLFNNHKLYPET*TAEKIAQEYHLEQKDVNSLLK |
Parental | YFVTFEVEIFPPEDKKAIRSK |
YFVTFEV.IFPPEDKKAI.SK | |
Retrocopy | YFVTFEVKIFPPEDKKAIQSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 11 .07 RPM |
bodymap2_adrenal | 0 .00 RPM | 18 .42 RPM |
bodymap2_brain | 0 .00 RPM | 53 .26 RPM |
bodymap2_breast | 0 .00 RPM | 20 .47 RPM |
bodymap2_colon | 0 .04 RPM | 25 .39 RPM |
bodymap2_heart | 0 .00 RPM | 45 .54 RPM |
bodymap2_kidney | 0 .00 RPM | 45 .99 RPM |
bodymap2_liver | 0 .00 RPM | 17 .70 RPM |
bodymap2_lung | 0 .07 RPM | 10 .69 RPM |
bodymap2_lymph_node | 0 .00 RPM | 26 .02 RPM |
bodymap2_ovary | 0 .00 RPM | 27 .32 RPM |
bodymap2_prostate | 0 .00 RPM | 31 .02 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 24 .64 RPM |
bodymap2_testis | 0 .00 RPM | 29 .01 RPM |
bodymap2_thyroid | 0 .00 RPM | 42 .39 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 8 .51 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CFW | POLR2A | 15:49447872..49448185 |
ENCFF002CFW | POLR2A | 15:49447604..49447889 |
ENCFF002CFX | POLR2A | 15:49447886..49448173 |
ENCFF002CGN | POLR2A | 15:49447886..49448163 |
ENCFF002CGN | POLR2A | 15:49447629..49447864 |
ENCFF002CHO | POLR2A | 15:49447495..49448241 |
ENCFF002CIH | POLR2A | 15:49447634..49447873 |
ENCFF002CIO | POLR2A | 15:49447602..49447891 |
ENCFF002CIO | POLR2A | 15:49447929..49448182 |
ENCFF002CJE | POLR2A | 15:49447547..49447927 |
ENCFF002CJZ | POLR2A | 15:49447569..49448245 |
ENCFF002CKX | POLR2A | 15:49447897..49448186 |
ENCFF002CKX | POLR2A | 15:49447595..49447899 |
ENCFF002CLM | POLR2A | 15:49447520..49448060 |
ENCFF002CMI | POLR2A | 15:49447535..49448225 |
ENCFF002COJ | POLR2A | 15:49447814..49448250 |
ENCFF002CPG | POLR2A | 15:49447664..49447866 |
ENCFF002CPG | POLR2A | 15:49447771..49448261 |
ENCFF002CPH | POLR2A | 15:49447563..49447953 |
ENCFF002CQA | POLR2A | 15:49447636..49447878 |
ENCFF002CQA | POLR2A | 15:49447951..49448141 |
ENCFF002CQC | POLR2A | 15:49447667..49447842 |
ENCFF002CQC | POLR2A | 15:49447963..49448109 |
ENCFF002CQE | POLR2A | 15:49447616..49447890 |
ENCFF002CQE | POLR2A | 15:49447918..49448143 |
ENCFF002CQG | POLR2A | 15:49447652..49447848 |
ENCFF002CQG | POLR2A | 15:49447762..49448286 |
ENCFF002CQI | POLR2A | 15:49447670..49447814 |
ENCFF002CQK | POLR2A | 15:49447586..49447901 |
ENCFF002CQK | POLR2A | 15:49447924..49448189 |
ENCFF002CQM | POLR2A | 15:49447648..49447885 |
ENCFF002CQM | POLR2A | 15:49447945..49448136 |
ENCFF002CQO | POLR2A | 15:49447593..49447902 |
ENCFF002CQO | POLR2A | 15:49447940..49448156 |
ENCFF002CRK | POLR2A | 15:49447486..49448010 |
ENCFF002CRO | POLR2A | 15:49447828..49448248 |
ENCFF002CSY | POLR2A | 15:49447520..49447948 |
ENCFF002CUP | POLR2A | 15:49447642..49447958 |
ENCFF002CUQ | POLR2A | 15:49447658..49447877 |
ENCFF002CUQ | POLR2A | 15:49447951..49448162 |
ENCFF002CVF | POLR2A | 15:49447567..49447983 |
ENCFF002CVJ | POLR2A | 15:49447647..49447898 |
ENCFF002CXM | POLR2A | 15:49447532..49448022 |
ENCFF002CXM | POLR2A | 15:49447779..49448269 |
ENCFF002CXN | POLR2A | 15:49447541..49448037 |
ENCFF002CXN | POLR2A | 15:49447774..49448270 |
ENCFF002CXO | POLR2A | 15:49447689..49447796 |
ENCFF002CXO | POLR2A | 15:49447793..49448217 |
ENCFF002CXP | POLR2A | 15:49447640..49447874 |
ENCFF002CXP | POLR2A | 15:49447947..49448146 |
ENCFF002CXQ | POLR2A | 15:49447349..49447999 |
ENCFF002CXQ | POLR2A | 15:49447608..49448258 |
ENCFF002CXR | POLR2A | 15:49447655..49447883 |
ENCFF002CXR | POLR2A | 15:49447774..49448210 |
ENCFF002CZC | POLR2A | 15:49447551..49448255 |
ENCFF002CZD | POLR2A | 15:49447580..49447887 |
ENCFF002CZD | POLR2A | 15:49447921..49448196 |
ENCFF002CZQ | POLR2A | 15:49447629..49447885 |
ENCFF002CZQ | POLR2A | 15:49447928..49448100 |
ENCFF002CZW | POLR2A | 15:49447528..49448335 |
ENCFF002CZY | POLR2A | 15:49447575..49448217 |
ENCFF002DAE | POLR2A | 15:49447873..49448183 |
ENCFF002DAH | POLR2A | 15:49447625..49447909 |
ENCFF002DAH | POLR2A | 15:49447872..49448156 |
ENCFF002DAK | POLR2A | 15:49447490..49447990 |
ENCFF002DAK | POLR2A | 15:49447794..49448294 |
ENCFF002DAS | POLR2A | 15:49447518..49447994 |
ENCFF002DAV | POLR2A | 15:49447508..49448052 |
ENCFF002DAV | POLR2A | 15:49447749..49448293 |
ENCFF002DAY | POLR2A | 15:49447462..49448098 |
ENCFF002DBB | POLR2A | 15:49447941..49448141 |
ENCFF002DBB | POLR2A | 15:49447656..49447856 |
ENCFF002DBE | POLR2A | 15:49447629..49447909 |
ENCFF002DBE | POLR2A | 15:49447958..49448116 |
ENCFF002DBO | POLR2A | 15:49447705..49447861 |
ENCFF002DBP | POLR2A | 15:49447860..49448190 |
ENCFF002DBP | POLR2A | 15:49447638..49447968 |
ENCFF002DBQ | POLR2A | 15:49447598..49447968 |
ENCFF002DBQ | POLR2A | 15:49447828..49448198 |
ENCFF002DBT | POLR2A | 15:49447840..49448210 |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1013 |
Gorilla gorilla | retro_ggor_1147 |
Pongo abelii | retro_pabe_1244 |
Macaca mulatta | retro_mmul_2138 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .11 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .08 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .11 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .06 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .05 RPM |
TSI_NA20798 | 0 .09 RPM |
YRI_NA18870 | 0 .10 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .10 RPM |
YRI_NA19214 | 0 .05 RPM |
YRI_NA19223 | 0 .04 RPM |