RetrogeneDB ID: | retro_hsap_2774 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:37831411..37831936(-) | ||
Located in intron of: | ENSG00000235257 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000236411 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF4 | ||
Ensembl ID: | ENSG00000123545 | ||
Aliases: | NDUFAF4, C6orf66, HRPAP20, My013, bA22L21.1 | ||
Description: | NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 [Source:HGNC Symbol;Acc:21034] |
Percent Identity: | 87.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEKLLSFLKDVYV |
MGA.V.R.IR..N.ENRAE.EISKMKPS.APRHPSTNSLL.EQISLYPE.KGEIA.KD.KLL.FLKDVYV | |
Retrocopy | MGAAVTRRIRHSNRENRAEWEISKMKPSPAPRHPSTNSLL*EQISLYPEIKGEIAHKDDKLLPFLKDVYV |
Parental | DSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEALTLLNNHKLFPETWTAEKIMQ |
DSKD.VSS.QVKAAET.QEPKEFRL.K.HHFDMINIKSIPKGKISIVEALTLLNNHKL.PETWTAEKI.Q | |
Retrocopy | DSKDLVSSAQVKAAETHQEPKEFRLLKGHHFDMINIKSIPKGKISIVEALTLLNNHKLYPETWTAEKIAQ |
Parental | EYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK |
EYQLEQKDVNSLLKYFVTFEV.IFPPEDKKAI.SK | |
Retrocopy | EYQLEQKDVNSLLKYFVTFEVKIFPPEDKKAIQSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .18 RPM | 11 .07 RPM |
bodymap2_adrenal | 0 .70 RPM | 18 .42 RPM |
bodymap2_brain | 0 .26 RPM | 53 .26 RPM |
bodymap2_breast | 0 .64 RPM | 20 .47 RPM |
bodymap2_colon | 0 .87 RPM | 25 .39 RPM |
bodymap2_heart | 0 .24 RPM | 45 .54 RPM |
bodymap2_kidney | 0 .39 RPM | 45 .99 RPM |
bodymap2_liver | 0 .00 RPM | 17 .70 RPM |
bodymap2_lung | 0 .39 RPM | 10 .69 RPM |
bodymap2_lymph_node | 0 .49 RPM | 26 .02 RPM |
bodymap2_ovary | 1 .33 RPM | 27 .32 RPM |
bodymap2_prostate | 0 .92 RPM | 31 .02 RPM |
bodymap2_skeletal_muscle | 0 .33 RPM | 24 .64 RPM |
bodymap2_testis | 0 .70 RPM | 29 .01 RPM |
bodymap2_thyroid | 0 .92 RPM | 42 .39 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 8 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1877 |
Gorilla gorilla | retro_ggor_1931 |
Pongo abelii | retro_pabe_2241 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |