RetrogeneDB ID: | retro_mmus_3668 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:95321316..95321777(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082371 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufaf4 | ||
Ensembl ID: | ENSMUSG00000028261 | ||
Aliases: | Ndufaf4, 1110007M04Rik, 3000003G13Rik, AW214064 | ||
Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 [Source:MGI Symbol;Acc:MGI:1915743] |
Percent Identity: | 72.78 % |
Parental protein coverage: | 88.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EISKRKPSMAPKHPS-TRDLLQEHRSQYPEIEEVVSKK-DNKLLSLLRDVYVDSKDPVPALPVK-VEPRQ |
E.SKR.....P...S.T...LQ....Q.P.I.E.VSK..D.KLLSLLRDVYVDSKDPVP.LPVK.VE..Q | |
Retrocopy | EPSKRSATGSPSWHS>TSFRLQAYLNQFPAIKEDVSKN>DIKLLSLLRDVYVDSKDPVPSLPVKDVELQQ |
Parental | EPKEFRLPIGNHFDKNITDIPKGKITVVEALTLLNNHKLSPETWTAEKIA-QEYYLELKDVNSLLKYFVT |
EPKE.RLPI..HFDKNI.DI.KGK.TVVEALTLLNNHKLSPET.TAEK...QEY.LELK.VNSLLKYFVT | |
Retrocopy | EPKESRLPI-DHFDKNIVDILKGKSTVVEALTLLNNHKLSPET*TAEKVT<QEYHLELKNVNSLLKYFVT |
Parental | FEV-KILPPEDRKAIQSK |
FEV.KI.PPEDRK.IQSK | |
Retrocopy | FEV>KIFPPEDRKTIQSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 24 .95 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .58 RPM |
SRP007412_heart | 0 .00 RPM | 39 .22 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .09 RPM |
SRP007412_liver | 0 .00 RPM | 24 .77 RPM |
SRP007412_testis | 0 .00 RPM | 2 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies |
retro_mmus_1153, retro_mmus_1290, retro_mmus_3668 ,
|
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |