RetrogeneDB ID:

retro_ggor_1147

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:15:28024388..28024871(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFAF4
Ensembl ID:ENSGGOG00000012070
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1147
GAGAACCGAGCGGAACGGGAAATCGGCAACATGAAGCCCTCTCTCGCTCCCAGGCACCCCTCTACCAGCAGCCTCCTGCC
AGAGCAGATTAGTCTCTATCCAGAAATTAAGGGAGAGATTGCTTGTAAACATGACAAGCTGCTGTCATTTCTAAAATATG
TGTATGTTGATTCCAAAGATCCTGTGTCTTCCGTGCAGCTGAAAGCTGCTGAAACACGTCAGGAGCCAAAGAAATTCAGA
TTGCCGAAAGGCCATCACTTTGATATGATAAATATTAAGAGCATTCCCAAAGGCAAAATTTCCACTGTAGAAGCATTGAC
ACTTTTCAATAATCATAAACTTTATCCAGAAACATGAACTGCTGAGAAAATAGCGCAAGAATATCATTTAGAACAGAAAG
ATGTGAATTCCCTTCTTAAATATTTTGTTACTTTTGAAGTCAAAATCTTCCCTCCTGAAGACAAGAAAGCAATACAATCA
AAA

ORF - retro_ggor_1147 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.71 %
Parental protein coverage: 92. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEKLLSFLKDVYVDSKDPVSSLQVKAA
ENRAEREI..MKPS.APRHPST.SLL.EQISLYPE.KGEIA.K..KLLSFLK.VYVDSKDPVSS.Q.KAA
RetrocopyENRAEREIGNMKPSLAPRHPSTSSLLPEQISLYPEIKGEIACKHDKLLSFLKYVYVDSKDPVSSVQLKAA
ParentalETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEALTLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLK
ET.QEPK.FRLPK.HHFDMINIKSIPKGKIS.VEALTL.NNHKL.PET.TAEKI.QEY.LEQKDVNSLLK
RetrocopyETRQEPKKFRLPKGHHFDMINIKSIPKGKISTVEALTLFNNHKLYPET*TAEKIAQEYHLEQKDVNSLLK
ParentalYFVTFEVEIFPPEDKKAIRSK
YFVTFEV.IFPPEDKKAI.SK
RetrocopyYFVTFEVKIFPPEDKKAIQSK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 10 .02 RPM
SRP007412_cerebellum 0 .00 RPM 5 .59 RPM
SRP007412_heart 0 .00 RPM 4 .97 RPM
SRP007412_kidney 0 .00 RPM 9 .73 RPM
SRP007412_liver 0 .00 RPM 7 .25 RPM
SRP007412_testis 0 .00 RPM 7 .56 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1147 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1147 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1494
Pan troglodytes retro_ptro_1013
Pongo abelii retro_pabe_1244
Macaca mulatta retro_mmul_2138

Parental genes homology:
Parental genes homology involve 15 parental genes, and 39 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000031741 retrocopy
Choloepus hoffmanni ENSCHOG000000051452 retrocopies
Callithrix jacchus ENSCJAG000000012352 retrocopies
Cavia porcellus ENSCPOG000000076181 retrocopy
Homo sapiens ENSG000001235454 retrocopies
Gorilla gorilla ENSGGOG00000012070 4 retrocopies
Microcebus murinus ENSMICG000000157341 retrocopy
Macaca mulatta ENSMMUG000000188434 retrocopies
Mus musculus ENSMUSG000000282613 retrocopies
Nomascus leucogenys ENSNLEG000000135684 retrocopies
Oryctolagus cuniculus ENSOCUG000000021521 retrocopy
Pongo abelii ENSPPYG000000168574 retrocopies
Pan troglodytes ENSPTRG000000184354 retrocopies
Rattus norvegicus ENSRNOG000000075063 retrocopies
Tursiops truncatus ENSTTRG000000109111 retrocopy



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