RetrogeneDB ID: | retro_pabe_2241 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:108927181..108927705(+) | ||
Located in intron of: | ENSPPYG00000014017 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF4 | ||
Ensembl ID: | ENSPPYG00000016857 | ||
Aliases: | NDUFAF4, HRPAP20 | ||
Description: | NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001126910] |
Percent Identity: | 78.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDNKLLSLLKDVYV |
MGA.V.R.IR.FNLENRAE.EI.KMKP...PRHPSTNSLL.EQISLY.E.KGE.A.KD.KLL..LKDVYV | |
Retrocopy | MGAAVTRRIRHFNLENRAEWEIGKMKPPPTPRHPSTNSLL*EQISLYAEIKGETAHKDDKLLPFLKDVYV |
Parental | DSKDPVPSLQVQAAETCQEPKEFRLPKDHHLDMINTKSIPKGKISITEALSLLNNHKLFPETWTAEKIAQ |
DSKD.V.S.QV.AAET.QEPKEFRL.K.HH.DMIN.KSIPKGKISI.EAL.LLNNHKL.PETWTA.K..Q | |
Retrocopy | DSKDLVSSTQVKAAETHQEPKEFRLLKGHHFDMINIKSIPKGKISIVEALILLNNHKLYPETWTAGKMVQ |
Parental | EYQLEQK-DVNSLLKYFATFEVEIFPPEDTKAIQSK |
EY.LEQK.DVN.LLKYF.TFEV.IFPPED.KAIQSK | |
Retrocopy | EYHLEQK<DVNTLLKYFVTFEVKIFPPEDKKAIQSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 27 .37 RPM |
SRP007412_cerebellum | 0 .12 RPM | 20 .19 RPM |
SRP007412_heart | 0 .00 RPM | 17 .16 RPM |
SRP007412_kidney | 0 .03 RPM | 11 .87 RPM |
SRP007412_liver | 0 .09 RPM | 14 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2774 |
Pan troglodytes | retro_ptro_1877 |
Gorilla gorilla | retro_ggor_1931 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |