Parental gene:

RPS6, ENSG00000137154

Aliases:RPS6, S6
Description:ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]
Organism:Human (Homo sapiens)
Coordinates:9:19375712..19380252(-)


>ENSG00000137154
ATGAAGCTGAACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAACGCAAACTTCGTACTTT
CTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTG
GTGGGAACGACAAACAAGGTTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGG
CATTCCTGTTACAGACCAAGGAGAACTGGAGAAAGAAAGAGAAAATCAGTTCGTGGTTGCATTGTGGATGCAAATCTGAG
CGTTCTCAACTTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCTGGACTGACTGATACTACAGTGCCTCGCCGCCTGG
GCCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTCCGCCAGTATGTTGTAAGAAAG
CCCTTAAATAAAGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTCCTGCAGCA
CAAACGGCGGCGTATTGCTCTGAAGAAGCAGCGTACCAAGAAAAATAAAGAAGAGGCTGCAGAATATGCTAAACTTTTGG
CCAAGAGAATGAAGGAGGCTAAGGAGAAGCGCCAGGAACAAATTGCGAAGAGACGCAGACTTTCCTCTCTGCGAGCTTCT
ACTTCTAAGTCTGAATCCAGTCAGAAATAA

Library Parental gene expression (RPM)
bodymap2_liver 424 .99 RPM
bodymap2_lung 1344 .15 RPM
bodymap2_breast 775 .53 RPM
bodymap2_adipose 1049 .46 RPM
bodymap2_adrenal 1614 .86 RPM
bodymap2_skeletal_muscle 449 .82 RPM
bodymap2_thyroid 1022 .65 RPM
bodymap2_prostate 1953 .08 RPM
bodymap2_colon 1858 .77 RPM
bodymap2_testis 1017 .90 RPM
bodymap2_brain 360 .09 RPM
bodymap2_heart 309 .57 RPM
bodymap2_white_blood_cells 1936 .41 RPM
bodymap2_lymph_node 1605 .87 RPM
bodymap2_ovary 1927 .03 RPM
bodymap2_kidney 734 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Echinops telfairi ENSETEG00000001584 ortholog_one2one 18 retrogenes
retro_etel_1143, retro_etel_1281, retro_etel_1410, retro_etel_1430, retro_etel_1575, retro_etel_167, retro_etel_1822, retro_etel_188, retro_etel_1964, retro_etel_2004, retro_etel_2041, retro_etel_2194, retro_etel_263, retro_etel_337, retro_etel_378, retro_etel_541, retro_etel_809, retro_etel_825,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Myotis lucifugus ENSMLUG00000007588 possible_ortholog 27 retrogenes
retro_mluc_1041, retro_mluc_1146, retro_mluc_1169, retro_mluc_1393, retro_mluc_1411, retro_mluc_1448, retro_mluc_1472, retro_mluc_1532, retro_mluc_1566, retro_mluc_1593, retro_mluc_1629, retro_mluc_1635, retro_mluc_1723, retro_mluc_1799, retro_mluc_1909, retro_mluc_1928, retro_mluc_1933, retro_mluc_2110, retro_mluc_2129, retro_mluc_490, retro_mluc_493, retro_mluc_514, retro_mluc_557, retro_mluc_652, retro_mluc_678, retro_mluc_722, retro_mluc_830,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pan troglodytes ENSPTRG00000039153 ortholog_one2one 19 retrogenes
retro_ptro_1313, retro_ptro_1442, retro_ptro_1627, retro_ptro_1662, retro_ptro_1994, retro_ptro_2442, retro_ptro_2713, retro_ptro_2799, retro_ptro_2878, retro_ptro_2902, retro_ptro_2938, retro_ptro_3235, retro_ptro_519, retro_ptro_569, retro_ptro_669, retro_ptro_749, retro_ptro_785, retro_ptro_799, retro_ptro_845,
Rattus norvegicus ENSRNOG00000007663 ortholog_one2one 21 retrogenes
retro_rnor_1092, retro_rnor_1093, retro_rnor_1269, retro_rnor_1484, retro_rnor_1556, retro_rnor_1564, retro_rnor_1845, retro_rnor_1901, retro_rnor_1991, retro_rnor_2071, retro_rnor_2073, retro_rnor_2187, retro_rnor_2332, retro_rnor_2447, retro_rnor_2781, retro_rnor_2790, retro_rnor_558, retro_rnor_756, retro_rnor_896, retro_rnor_942, retro_rnor_943,
Sorex araneus ENSSARG00000006549 ortholog_one2one 6 retrogenes
retro_sara_284, retro_sara_369, retro_sara_392, retro_sara_436, retro_sara_512, retro_sara_710,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_731 71.94 100.00
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2. retro_hsap_818 81.53 100.00
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3. retro_hsap_966 86.06 99.60
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4. retro_hsap_1009 78.57 57.34
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5. retro_hsap_1067 68.61 61.01
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6. retro_hsap_1231 57.50 71.10
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7. retro_hsap_1310 54.29 62.84
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8. retro_hsap_1967 86.40 100.00
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9. retro_hsap_2184 65.42 85.54
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10. retro_hsap_2298 74.81 52.61
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11. retro_hsap_3045 64.19 85.54
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12. retro_hsap_3996 86.40 100.00
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13. retro_hsap_4122 70.09 96.79
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14. retro_hsap_4235 87.10 62.25
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15. retro_hsap_4279 83.02 63.86
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16. retro_hsap_4860 86.26 59.63
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Download FASTA sequences of all ENSG00000137154 retrocopies