RetrogeneDB ID: | retro_etel_1964 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_320199:76401..77020(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 82.71 % |
Parental protein coverage: | 84.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ALGDEWKGYVVRIS-GGNDKQGF-PMKQ-GVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANL |
ALGDE.K......S.GG...QGF.PMKQ.GV...G.V...L.KGHSCYRPRRTGER.RKSVRGCIVDA.L | |
Retrocopy | ALGDEMKRLSFSVSAGGEATQGF>PMKQ>GVFHPGCVAF*LIKGHSCYRPRRTGERNRKSVRGCIVDAHL |
Parental | SVLNLVIVKKGEKDIPGLTDTTVPRRLGLKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKI |
SVLNLVIVKKGEKDIPGLTDTTVPRRLG.KRASR..KLF.LSKEDDVRQYVVRKPLNKEGKKPRTKAPKI | |
Retrocopy | SVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRLCKLFSLSKEDDVRQYVVRKPLNKEGKKPRTKAPKI |
Parental | QRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTS-KSE |
QRL.TPRVLQ....RIALKKQRTKKNK.EAA.YAKLLAKRMKEAKEK.QEQIAKRRRL.SLRASTS.KSE | |
Retrocopy | QRLMTPRVLQ----RIALKKQRTKKNK-EAAKYAKLLAKRMKEAKEKWQEQIAKRRRLPSLRASTS<KSE |
Parental | SSQK |
SSQK | |
Retrocopy | SSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |