RetrogeneDB ID: | retro_etel_809 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_167109:4717..5149(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 72.22 % |
Parental protein coverage: | 57.83 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | LSVLNLVIVKKGEKDIPGLTDTTVPRRLGLKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPK |
LS.LNLVI....EKD.PGLT.TTVP..L..KRASRI.K..NLSKEDD..QYVVRK.LNKEGKKP.TKAP. | |
Retrocopy | LSILNLVIF*EEEKDTPGLTNTTVPHHLRPKRASRILKRSNLSKEDDAHQYVVRKTLNKEGKKP*TKAPM |
Parental | IQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSE |
IQRL.TP.VLQHK...I.LKK..TKKN.EEAA..AKL.AK.MKEA..K...QIAKR.RLSSLRAST.KS. | |
Retrocopy | IQRLTTPHVLQHKWLCITLKKRCTKKNNEEAAQSAKLFAKKMKEAEAKCWAQIAKR*RLSSLRASTFKSK |
Parental | SSQK |
SSQK | |
Retrocopy | SSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |