RetrogeneDB ID: | retro_mluc_1169 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429803:3301191..3301934(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSMLUG00000007588 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:G1P9K5] |
Percent Identity: | 80.48 % |
Parental protein coverage: | 99.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKR-MATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGV-L |
MKLNISFPATGC.KL.EVDDERKLRTFYEK..MAT.VAAD.LGE..KGYVVRIS.G.DK.G.PMKQGV.L | |
Retrocopy | MKLNISFPATGCEKLTEVDDERKLRTFYEKH>MATAVAADSLGEVRKGYVVRISSGYDKHGVPMKQGV<L |
Parental | THGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRA |
THG.VRLLLS.GHSC.R.RRTGERK.K.VRGCIVDANLSVLN.VI........PGLTD..VP.RLGPKRA | |
Retrocopy | THGHVRLLLSTGHSC*RTRRTGERKCKCVRGCIVDANLSVLNKVIXXXXGERYPGLTDAAVPHRLGPKRA |
Parental | SRIRKLFNLSKEDDVRKYVVRKPLNKEGKK-PRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAA |
SRIRKLFNLSKEDDVR.YVVRKPLNKEGKK..RTKAP..Q.LVTP.VLQHK...IAL.KQR.KKNKEEAA | |
Retrocopy | SRIRKLFNLSKEDDVRQYVVRKPLNKEGKK<TRTKAP*VQCLVTPHVLQHKHQSIALRKQRAKKNKEEAA |
Parental | EYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQ |
EYAK.LAKRMKEAKEKRQE..A.RRR.S.LRASTSKSESSQ | |
Retrocopy | EYAKRLAKRMKEAKEKRQEHTAERRRRSPLRASTSKSESSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |