RetrogeneDB ID: | retro_etel_1822 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_303356:4058..4809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 59.06 % |
Parental protein coverage: | 99.6 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAAEALGDEWKGYVVRI-SGG-NDKQGFPMKQGVL |
MKLNISF.A.G.QKLIEVDDE.KLRTF.EK..ATEVAA.AL.DEWK.Y.V....GG.N.KQGFP.K.G.L | |
Retrocopy | MKLNISFSAAGFQKLIEVDDEHKLRTFHEK*TATEVAAQALSDEWKCYAVCM<DGG<NNKQGFPAKLGIL |
Parental | THGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVI---VKKGEKDIPGLTDTTVPRRLGL |
THGR..LLLS.GHS.Y.PRRTGERK.KS..GC.VDA.LS.LNLVI......GE.....L........... | |
Retrocopy | THGRIHLLLSEGHSYYTPRRTGERKCKSIWGCMVDAKLSILNLVIXXXXRRGERSRD*LIQLCLTASFPK |
Parental | KRASRIRKLFNLSKEDDVRQYVVRKPLNKEG-KKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKE |
..A...R....L..E.D.....V...L...G..K..TK.PKI..L.TP.VL.HK.R.IALKKQR.KKNK. | |
Retrocopy | E*AASARAR*CLIIEEDNDHQYVVRRLLNKGGRKHSTKVPKIRSLQTPSVL*HKHRWIALKKQRHKKNK- |
Parental | EAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQ |
EAAEY.KLL.KR.KEA..KRQE.I.K...LSSLRAS.SK..S.Q | |
Retrocopy | EAAEYVKLLTKRTKEANVKRQEPIVKLCMLSSLRASASKAASGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |