RetrogeneDB ID: | retro_etel_378 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_6534:235918..236662(+) | ||
Located in intron of: | ENSETEG00000019090 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 89.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAAEALGDEWKGYVVRISGGNDKQGFPMKQGVLTH |
MKLNISFPATGCQKL.EVDDERKLRTFYEK.MATEV.A.ALGD.WKGYVVRISGGNDKQGFPMKQGVLT. | |
Retrocopy | MKLNISFPATGCQKLVEVDDERKLRTFYEK*MATEVTAKALGDDWKGYVVRISGGNDKQGFPMKQGVLTQ |
Parental | GR-VRLLLSKGHSCYRPRRTGERKRKSVR-GCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGLKRA |
G..VRLLLSKGHSCYRPRRTGE.KRKS.R.GCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR.L..KRA | |
Retrocopy | GL>VRLLLSKGHSCYRPRRTGEKKRKSGR<GCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRCLRPKRA |
Parental | SRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAE |
SRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTP.VLQHKRRR..LKKQRT..NKEEAAE | |
Retrocopy | SRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPHVLQHKRRRLVLKKQRT-ENKEEAAE |
Parental | YAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
.AKL....MKEAKEKRQEQIAKRRR.SSLRAST.KSES.QK | |
Retrocopy | *AKLASNIMKEAKEKRQEQIAKRRRPSSLRASTAKSESNQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |