RetrogeneDB ID: | retro_etel_825 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_170367:1729..2171(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 71.24 % |
Parental protein coverage: | 60.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LNISFPATGCQ-KLIEVDDERKLRTFYEKRMATEVAAEALGDEWKGYVVRISGGNDKQGFPMKQGVLTHG |
LNISFP.TGCQ..LI.VD...KL..FYEK.MATEV.A..LGDEWKGYVVRISGGNDK..F.MKQGV.THG | |
Retrocopy | LNISFPDTGCQ<ELIAVDNVPKLCIFYEK*MATEVTAKTLGDEWKGYVVRISGGNDKHSFSMKQGV*THG |
Parental | RVRLLLSKGHSCYRPRRTGERKRKSVRGCIV-DANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGLKRASR |
.V.LLLSKG..CYR.RRTG....KSV.GCIV.DANLSVLNLVI.K.G.K.IPGLTDT.VP..LG.K.A.R | |
Retrocopy | *VCLLLSKGCFCYRQRRTG---YKSVQGCIV<DANLSVLNLVIAKRGDKAIPGLTDTAVPCHLGHKTACR |
Parental | IRKLFNLSKEDDV |
I.KLF.L...DD. | |
Retrocopy | IHKLFILF*RDDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |