RetrogeneDB ID: | retro_sara_710 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_261326:284970..285708(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSSARG00000006549 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 50.59 % |
Parental protein coverage: | 99.6 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | KLNISYPATGCQKLIEVDDERK-LRTFYEKRMATEVAAD-ALGEEWKGYVVRISGGNDKQGFPMKQGVLT |
KL..S...T.CQ...EVDDE.K...T..EK.MAT.V.AD..LG.EW..Y.V.I..G.............T | |
Retrocopy | KLSVSFSHTCCQGVSEVDDEYK<TYTSFEK*MAT*VVAD>TLGKEWQAYIVGIC-GGNNKQSKVSLCRKT |
Parental | HGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDT-TVPRRLG-PKR |
.G.V..LL.KG.SCYRP.....RKR.S...CI..A.LSVLNLVIVKKG.K.I..LTDT.TV...LG.P.. | |
Retrocopy | YGQVQQLLNKGLSCYRPSEIAKRKRESIPSCILNAKLSVLNLVIVKKGYKEISRLTDT<TVLQYLG<PNL |
Parental | ASRIRKLFNLSKEDDVRQYVVKKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAA |
.SRI......S...DV..YV..K.L.KE.KKPRTK..KIQ.LVTPRVLQHK...I......TKK.K.... | |
Retrocopy | VSRIQQFLHFSQGRDVCRYVLHKLLKKEAKKPRTKV*KIQCLVTPRVLQHKHQSIKQXXXYTKKSKDVSI |
Parental | EYAKL-LAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
....L...K..K.AKE..QE.I.KR.RLS.LR.S.SK.E...K | |
Retrocopy | R*TQL<FLKTIKKAKETPQEHIVKR*RLSFLRGSASKFEFNPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |