Parental gene:

ENSSARG00000005798

Aliases:None
Description:None
Organism:Shrew (Sorex araneus)
Coordinates:GeneScaffold_4771:24..3075(-)


>ENSSARG00000005798
ATGAAGTTCAATCCTTTTGTGACTTCTGACCGGAGCAAGAACCGTAAGAGGCATTTCAATGCACCTTCCCACATTCGTAG
GAAGATTATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTACAATGTGCGATCCATGCCCATCCGGAAGGACGATG
AGGTTCAGGTTGTAAGGGGACACTACAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATATGTTATC
TACATTGAACGAGTCCAGCGGGAAAAGGCAAATGGCACAACTGTCCATGTGGGCATTCACCCCAGTAAGGTGGTTATCAC
CAGGCTAAAACTGGACAAAGATCGCAAAAAGATCCTTGAACGCAAAGCCAAGTCTCGCCAAGTAGGAAAGGAGAAGAATA
TAAGGAAGAAACGCTTGAGAAGATGCAGGAATAAATTATATACACTTGATTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002453 possible_ortholog 7 retrogenes
retro_amel_1175, retro_amel_1535, retro_amel_1885, retro_amel_1934, retro_amel_360, retro_amel_499, retro_amel_900,
Bos taurus ENSBTAG00000012344 possible_ortholog 2 retrogenes
retro_btau_1090, retro_btau_230,
Callithrix jacchus ENSCJAG00000014372 possible_ortholog 8 retrogenes
retro_cjac_110, retro_cjac_119, retro_cjac_240, retro_cjac_250, retro_cjac_270, retro_cjac_297, retro_cjac_321, retro_cjac_362,
Felis catus ENSFCAG00000011259 possible_ortholog 13 retrogenes
retro_fcat_1090, retro_fcat_1151, retro_fcat_1198, retro_fcat_1236, retro_fcat_1257, retro_fcat_1309, retro_fcat_1412, retro_fcat_1652, retro_fcat_1801, retro_fcat_1845, retro_fcat_1965, retro_fcat_497, retro_fcat_801,
Homo sapiens ENSG00000161970 possible_ortholog 27 retrogenes
retro_hsap_1137, retro_hsap_1309, retro_hsap_1376, retro_hsap_1394, retro_hsap_191, retro_hsap_2108, retro_hsap_2165, retro_hsap_2253, retro_hsap_253, retro_hsap_267, retro_hsap_2946, retro_hsap_3118, retro_hsap_3260, retro_hsap_3324, retro_hsap_3490, retro_hsap_3700, retro_hsap_3803, retro_hsap_3813, retro_hsap_3914, retro_hsap_4043, retro_hsap_4061, retro_hsap_4874, retro_hsap_4932, retro_hsap_642, retro_hsap_691, retro_hsap_915, retro_hsap_998,
Myotis lucifugus ENSMLUG00000002176 possible_ortholog 1 retrogene
retro_mluc_232,
Macaca mulatta ENSMMUG00000003448 possible_ortholog 22 retrogenes
retro_mmul_1117, retro_mmul_1361, retro_mmul_1398, retro_mmul_1497, retro_mmul_1710, retro_mmul_1773, retro_mmul_1899, retro_mmul_1986, retro_mmul_2052, retro_mmul_2163, retro_mmul_2332, retro_mmul_2344, retro_mmul_325, retro_mmul_360, retro_mmul_398, retro_mmul_405, retro_mmul_448, retro_mmul_548, retro_mmul_805, retro_mmul_903, retro_mmul_920, retro_mmul_992,
Monodelphis domestica ENSMODG00000006201 possible_ortholog 2 retrogenes
retro_mdom_36, retro_mdom_64,
Nomascus leucogenys ENSNLEG00000009981 possible_ortholog 1 retrogene
retro_nleu_76,
Otolemur garnettii ENSOGAG00000017070 possible_ortholog 3 retrogenes
retro_ogar_118, retro_ogar_255, retro_ogar_66,
Sarcophilus harrisii ENSSHAG00000006890 possible_ortholog 1 retrogene
retro_shar_458,
Sus scrofa ENSSSCG00000028850 possible_ortholog 9 retrogenes
retro_sscr_261, retro_sscr_363, retro_sscr_426, retro_sscr_427, retro_sscr_471, retro_sscr_485, retro_sscr_508, retro_sscr_609, retro_sscr_736,
Tarsius syrichta ENSTSYG00000001483 ortholog_one2one 17 retrogenes
retro_tsyr_1273, retro_tsyr_1274, retro_tsyr_1499, retro_tsyr_153, retro_tsyr_1705, retro_tsyr_1858, retro_tsyr_1869, retro_tsyr_2152, retro_tsyr_262, retro_tsyr_327, retro_tsyr_346, retro_tsyr_600, retro_tsyr_636, retro_tsyr_684, retro_tsyr_808, retro_tsyr_865, retro_tsyr_905,
Vicugna pacos ENSVPAG00000000279 ortholog_one2one 4 retrogenes
retro_vpac_214, retro_vpac_255, retro_vpac_26, retro_vpac_357,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sara_172 64.29 88.67
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2. retro_sara_208 67.39 91.33
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3. retro_sara_228 89.40 98.67
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4. retro_sara_273 51.18 82.67
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5. retro_sara_319 65.85 54.00
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6. retro_sara_334 56.95 96.67
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7. retro_sara_393 71.33 94.00
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8. retro_sara_527 60.00 74.00
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9. retro_sara_578 59.80 67.33
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10. retro_sara_627 60.40 95.33
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11. retro_sara_641 82.52 91.33
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12. retro_sara_656 65.29 78.00
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13. retro_sara_740 89.86 91.33
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Download FASTA sequences of all ENSSARG00000005798 retrocopies