RetrogeneDB ID: | retro_fcat_1652 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:28624935..28625368(+) | ||
Located in intron of: | ENSFCAG00000018470 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSFCAG00000011259 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 87.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVR-GHYKGQQIGK |
MKFN.FVTSDRSKN.KRHFNAPSHI.RK.MSSPLSKEL.QKYNV.SMPI.KDDEVQVV..GHYKGQQIGK | |
Retrocopy | MKFNLFVTSDRSKNHKRHFNAPSHIHRKSMSSPLSKELQQKYNVQSMPIPKDDEVQVVE<GHYKGQQIGK |
Parental | VVQVYRKKYVIYIERVQR-EKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEE |
VVQVYRKK.VIYIE.VQR..KANGTTV..GIHPSKVVIT.LKLDKD.KKILERK.KSR.VGKEKGKYKEE | |
Retrocopy | VVQVYRKKCVIYIEQVQR<RKANGTTVYMGIHPSKVVITGLKLDKDHKKILERKSKSRLVGKEKGKYKEE |
Parental | TIEKMQE |
TIEKMQE | |
Retrocopy | TIEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 116 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 548 .68 RPM |
SRP017611_liver | 0 .00 RPM | 268 .19 RPM |