RetrogeneDB ID: | retro_fcat_1309 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:139403139..139403424(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSFCAG00000011259 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 69.47 % |
Parental protein coverage: | 65.52 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | SPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHP |
S...KELRQK.N.RS.P..KDD.VQVV.GHYKGQQIGKVVQVYRKKY.IYI..VQ.EKA.GTTVH.G..P | |
Retrocopy | SHICKELRQKCNIRSVPM*KDDKVQVVQGHYKGQQIGKVVQVYRKKYIIYID*VQ*EKAHGTTVHMGLRP |
Parental | SKVVITRLKLDKDRKKILERKAKSR |
.KV..TRLKLD.D.K.ILE...K.. | |
Retrocopy | RKVAVTRLKLDRDHKRILEGEEKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 116 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 548 .68 RPM |
SRP017611_liver | 0 .00 RPM | 268 .19 RPM |