RetrogeneDB ID: | retro_fcat_801 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:131983337..131983773(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSFCAG00000011259 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 76.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAP-SHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
MK.NP.VTS.RSKN..RHFNAP.SHI.R.I.SS.LSK.LRQKYN.....I.KDDE.Q.V.GHYKGQQIGK | |
Retrocopy | MKSNPSVTSERSKNHRRHFNAP>SHICREIVSSCLSKKLRQKYNI*PVAIQKDDEIQLVQGHYKGQQIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEET |
VVQVY.KKY.IY.E.VQR.K..GTTVHVGIHPSKVVITRLK.DKD.KKILERK.KS.QV.K.KGKYKEET | |
Retrocopy | VVQVYGKKYAIYTE*VQRQKTSGTTVHVGIHPSKVVITRLKVDKDHKKILERKTKSHQVVK*KGKYKEET |
Parental | IEKMQE |
IEKM.E | |
Retrocopy | IEKM*E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 116 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 548 .68 RPM |
SRP017611_liver | 0 .00 RPM | 268 .19 RPM |