RetrogeneDB ID: | retro_mmul_903 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:11357818..11358250(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 70.14 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVV |
K..PFVT.D.SKN.K.HFNAPSHI..KIMSSPLS.ELRQK.N..SM....DD.VQVV.GHYKGQ.IGK.V | |
Retrocopy | KASPFVTCDQSKNWKSHFNAPSHIHKKIMSSPLSRELRQKRNIQSMCM*NDDNVQVVQGHYKGQEIGKIV |
Parental | QVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIE |
.V.RKKY.IYIE..QREKANGTTV.VGIHPS..V.T.LKLDK..K.ILE.K.KS..V.K.K.K..EETI. | |
Retrocopy | RV*RKKYMIYIE*MQREKANGTTVPVGIHPSRMVATKLKLDKECKNILEPKGKSH*VQKRKDKFEEETIQ |
Parental | KMQE |
KMQE | |
Retrocopy | KMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .00 RPM | 70 .06 RPM |
SRP007412_testis | 0 .00 RPM | 20 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2165 |
Sus scrofa | retro_sscr_485 |
Equus caballus | retro_ecab_429 |