RetrogeneDB - Parental gene ENSFCAG00000011259 details

							
>ENSFCAG00000011259
ATGAAGTTCAATCCGTTTGTGACCTCCGATCGGAGCAAGAACCGTAAAAGGCATTTCAATGCACCTTCGCACATTCGCAG

GAAGATTATGTCCTCCCCTCTTTCCAAAGAGCTACGACAGAAGTACAACGTTCGATCCATGCCCATCCGGAAGGACGACG

AAGTACAGGTTGTGCGAGGACACTACAAAGGTCAGCAGATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCATC

TACATTGAACGAGTGCAGCGAGAGAAGGCCAATGGCACAACTGTCCACGTGGGCATCCACCCCAGCAAGGTGGTTATCAC

TAGACTAAAACTGGACAAAGACCGCAAAAAGATCCTTGAACGCAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGGGCA

AATATAAGGAAGAAACAATTGAGAAGATGCAGGAATAA

Library	Parental gene expression (RPM)
SRP017611_liver	268 .19 RPM
SRP017611_kidney	548 .68 RPM
SRP017611_brain	116 .15 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000002453	possible_ortholog	7 retrogenes	retro_amel_1175, retro_amel_1535, retro_amel_1885, retro_amel_1934, retro_amel_360, retro_amel_499, retro_amel_900,
Choloepus hoffmanni	ENSCHOG00000004703	possible_ortholog	10 retrogenes	retro_chof_149, retro_chof_1893, retro_chof_2147, retro_chof_2276, retro_chof_2333, retro_chof_2383, retro_chof_244, retro_chof_312, retro_chof_816, retro_chof_942,
Callithrix jacchus	ENSCJAG00000014372	ortholog_one2one	8 retrogenes	retro_cjac_110, retro_cjac_119, retro_cjac_240, retro_cjac_250, retro_cjac_270, retro_cjac_297, retro_cjac_321, retro_cjac_362,
Dasypus novemcinctus	ENSDNOG00000002470	possible_ortholog	3 retrogenes	retro_dnov_2054, retro_dnov_2174, retro_dnov_378,
Equus caballus	ENSECAG00000015757	possible_ortholog	4 retrogenes	retro_ecab_429, retro_ecab_473, retro_ecab_515, retro_ecab_609,
Felis catus	ENSFCAG00000026949	within_species_paralog	1 retrogene	retro_fcat_524,
Gorilla gorilla	ENSGGOG00000023944	possible_ortholog	4 retrogenes	retro_ggor_2565, retro_ggor_270, retro_ggor_51, retro_ggor_974,
Myotis lucifugus	ENSMLUG00000002176	possible_ortholog	1 retrogene	retro_mluc_232,
Macaca mulatta	ENSMMUG00000003448	possible_ortholog	22 retrogenes	retro_mmul_1117, retro_mmul_1361, retro_mmul_1398, retro_mmul_1497, retro_mmul_1710, retro_mmul_1773, retro_mmul_1899, retro_mmul_1986, retro_mmul_2052, retro_mmul_2163, retro_mmul_2332, retro_mmul_2344, retro_mmul_325, retro_mmul_360, retro_mmul_398, retro_mmul_405, retro_mmul_448, retro_mmul_548, retro_mmul_805, retro_mmul_903, retro_mmul_920, retro_mmul_992,
Monodelphis domestica	ENSMODG00000006201	possible_ortholog	2 retrogenes	retro_mdom_36, retro_mdom_64,
Mustela putorius furo	ENSMPUG00000007988	possible_ortholog	12 retrogenes	retro_mputfur_1003, retro_mputfur_1146, retro_mputfur_1385, retro_mputfur_1428, retro_mputfur_1595, retro_mputfur_251, retro_mputfur_365, retro_mputfur_395, retro_mputfur_488, retro_mputfur_522, retro_mputfur_643, retro_mputfur_685,
Nomascus leucogenys	ENSNLEG00000009981	possible_ortholog	1 retrogene	retro_nleu_76,
Pan troglodytes	ENSPTRG00000008742	possible_ortholog	3 retrogenes	retro_ptro_1546, retro_ptro_2510, retro_ptro_73,
Rattus norvegicus	ENSRNOG00000004214	possible_ortholog	3 retrogenes	retro_rnor_213, retro_rnor_260, retro_rnor_273,
Sorex araneus	ENSSARG00000005798	possible_ortholog	13 retrogenes	retro_sara_172, retro_sara_208, retro_sara_228, retro_sara_273, retro_sara_319, retro_sara_334, retro_sara_393, retro_sara_527, retro_sara_578, retro_sara_627, retro_sara_641, retro_sara_656, retro_sara_740,
Sarcophilus harrisii	ENSSHAG00000006890	possible_ortholog	1 retrogene	retro_shar_458,
Sus scrofa	ENSSSCG00000028850	possible_ortholog	9 retrogenes	retro_sscr_261, retro_sscr_363, retro_sscr_426, retro_sscr_427, retro_sscr_471, retro_sscr_485, retro_sscr_508, retro_sscr_609, retro_sscr_736,
Tupaia belangeri	ENSTBEG00000007749	possible_ortholog	53 retrogenes	retro_tbel_1053, retro_tbel_1088, retro_tbel_1103, retro_tbel_1140, retro_tbel_1366, retro_tbel_1389, retro_tbel_1390, retro_tbel_1391, retro_tbel_1433, retro_tbel_1497, retro_tbel_1512, retro_tbel_1767, retro_tbel_1793, retro_tbel_1928, retro_tbel_1930, retro_tbel_2005, retro_tbel_2033, retro_tbel_2053, retro_tbel_2057, retro_tbel_2099, retro_tbel_2105, retro_tbel_2332, retro_tbel_2416, retro_tbel_2465, retro_tbel_2500, retro_tbel_268, retro_tbel_2727, retro_tbel_2778, retro_tbel_2806, retro_tbel_2884, retro_tbel_3020, retro_tbel_3187, retro_tbel_3300, retro_tbel_3332, retro_tbel_3704, retro_tbel_3711, retro_tbel_3790, retro_tbel_3964, retro_tbel_404, retro_tbel_4162, retro_tbel_4200, retro_tbel_4381, retro_tbel_4416, retro_tbel_446, retro_tbel_4480, retro_tbel_470, retro_tbel_474, retro_tbel_495, retro_tbel_573, retro_tbel_863, retro_tbel_906, retro_tbel_964, retro_tbel_99,
Tarsius syrichta	ENSTSYG00000001483	possible_ortholog	17 retrogenes	retro_tsyr_1273, retro_tsyr_1274, retro_tsyr_1499, retro_tsyr_153, retro_tsyr_1705, retro_tsyr_1858, retro_tsyr_1869, retro_tsyr_2152, retro_tsyr_262, retro_tsyr_327, retro_tsyr_346, retro_tsyr_600, retro_tsyr_636, retro_tsyr_684, retro_tsyr_808, retro_tsyr_865, retro_tsyr_905,
Vicugna pacos	ENSVPAG00000000279	possible_ortholog	4 retrogenes	retro_vpac_214, retro_vpac_255, retro_vpac_26, retro_vpac_357,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_497	88.97	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_fcat_801	76.71	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_fcat_1090	71.03	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_fcat_1151	80.14	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_fcat_1198	68.07	80.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_fcat_1236	78.62	99.31	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_fcat_1257	65.28	98.62	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_fcat_1309	69.47	65.52	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_fcat_1412	65.12	87.59	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_fcat_1652	87.07	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_fcat_1801	66.67	77.93	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_fcat_1845	78.20	89.66	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_fcat_1965	74.14	79.31	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000011259 retrocopies

Parental gene:	RPL26, ENSFCAG00000011259
Aliases:	None
Description:	ribosomal protein L26 [Source:HGNC Symbol;Acc:10327]
Organism:	*Cat (Felis catus)*
Coordinates:	E1:3023925..3029903(-)

Parental gene:

RPL26, ENSFCAG00000011259