RetrogeneDB ID: | retro_mmul_448 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:195666862..195667293(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 84.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGH-YKGQQIGK |
MKFNPFVTSDRSKNRKRHFNAPSHI.RKIMSSPLSKELR.KYN...MPI.KDD.VQVV.GH..KG.QIGK | |
Retrocopy | MKFNPFVTSDRSKNRKRHFNAPSHIHRKIMSSPLSKELRLKYNM*FMPIQKDDDVQVV*GH<LKG*QIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEET |
VVQVYRKKYVIY.E.VQ.EKANGTTVH.GIHP.K.VITRLKL.KDR.KILERKAKS.QVGKEKGKY.EET | |
Retrocopy | VVQVYRKKYVIYTEWVQWEKANGTTVHIGIHPRK-VITRLKLGKDREKILERKAKSPQVGKEKGKYQEET |
Parental | IEKMQE |
..KMQE | |
Retrocopy | TDKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .00 RPM | 70 .06 RPM |
SRP007412_testis | 0 .08 RPM | 20 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_253 |