RetrogeneDB ID: | retro_hsap_1309 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:28959115..28959466(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000240179 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSG00000161970 | ||
Aliases: | RPL26, DBA11, L26 | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 66.39 % |
Parental protein coverage: | 82.76 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSS-PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
MK.NPFVTSD.SKN.KR.FNAPSHI.RK.MSS.P.SK.LRQK..VRSM.I.K.D.V.VV.GH.......K | |
Retrocopy | MKVNPFVTSDQSKNCKRCFNAPSHILRKSMSS>PVSKVLRQKLKVRSMSIQKNDGVHVV*GH*Q---VSK |
Parental | VVQVYRKKYVIYIERVQRE-KANGTTVHVGIHPSKVVITRLKLDKDRKKILE |
.V..YRKKYVI..E..Q.E.K.NGTT.H.GIHPSKVVI.RLKL..D.K.ILE | |
Retrocopy | AV*IYRKKYVIFTE*MQQE<KGNGTTAHMGIHPSKVVIARLKLGQDGKRILE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 230 .25 RPM |
bodymap2_adrenal | 0 .00 RPM | 312 .12 RPM |
bodymap2_brain | 0 .00 RPM | 131 .90 RPM |
bodymap2_breast | 0 .00 RPM | 213 .50 RPM |
bodymap2_colon | 0 .00 RPM | 447 .49 RPM |
bodymap2_heart | 0 .00 RPM | 108 .92 RPM |
bodymap2_kidney | 0 .00 RPM | 180 .52 RPM |
bodymap2_liver | 0 .00 RPM | 109 .88 RPM |
bodymap2_lung | 0 .00 RPM | 352 .18 RPM |
bodymap2_lymph_node | 0 .00 RPM | 392 .35 RPM |
bodymap2_ovary | 0 .04 RPM | 384 .53 RPM |
bodymap2_prostate | 0 .00 RPM | 473 .22 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 246 .63 RPM |
bodymap2_testis | 0 .00 RPM | 253 .88 RPM |
bodymap2_thyroid | 0 .00 RPM | 176 .26 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 432 .25 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_37570 | 421 libraries | 636 libraries | 719 libraries | 48 libraries | 5 libraries |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_2163 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |