RetrogeneDB ID: | retro_mmul_405 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:117446313..117446775(+) | ||
Located in intron of: | ENSMMUG00000014620 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 70.13 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
.KFNPFVTS..SK..KR.FNAPSHI.R.IMSSPL..ELRQKY...SMPI.KDD..Q.V.GHYKGQQ.G.. | |
Retrocopy | IKFNPFVTSG*SKKHKRCFNAPSHIHRTIMSSPLP*ELRQKYSIHSMPIQKDDKFQIVQGHYKGQQTGNL |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKNTRK--KQ |
V.VYRKKY.I..E.VQ.EKANGTTVHVGIHPS.VVITRL.LDKDRKKILE.K.KS..V.KEK........ | |
Retrocopy | VKVYRKKYIINTEQVQWEKANGTTVHVGIHPSMVVITRLRLDKDRKKILEQKVKSHEVRKEKAKIQGINK |
Parental | LRRCRNKVILYKSF |
.RRCRNK.ILY..F | |
Retrocopy | MRRCRNKAILYTNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .34 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .13 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .04 RPM | 70 .06 RPM |
SRP007412_testis | 0 .04 RPM | 20 .05 RPM |