RetrogeneDB ID: | retro_mmul_1117 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:91615942..91616371(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 76.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMS-SPLSKELRQKYNVRSMPIRKDDEVQ-VVRGHYKGQQIG |
MKFNPFVT.D..KN.K.HFN.PSHI.R.IM..S.LSKELRQ.Y.V.SMPI.KDDEVQ.VV.GHYKGQQIG | |
Retrocopy | MKFNPFVTLD*IKNHKGHFNEPSHILRRIMF<SLLSKELRQEYDVQSMPI*KDDEVQ<VV*GHYKGQQIG |
Parental | KVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRK-KILERKAKSRQVGKEKGKYKE |
KVVQVYR.KYVIYIE.VQ..K.N.TT.HVGIH.S..VITRLKLDKD.K.KILE.KA.S.QVG..KGKYKE | |
Retrocopy | KVVQVYRMKYVIYIEQVQWKKSNCTTAHVGIHHSRAVITRLKLDKDAK<KILEQKANSCQVGMGKGKYKE |
Parental | ETIEKMQE |
ETI.KMQE | |
Retrocopy | ETI-KMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .00 RPM | 70 .06 RPM |
SRP007412_testis | 0 .00 RPM | 20 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_915 |