RetrogeneDB ID: | retro_mmul_1899 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:101318549..101318984(+) | ||
Located in intron of: | ENSMMUG00000018626 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000009066 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 98.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGH.KGQQIGKV | |
Retrocopy | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHCKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITR.KLDKDRKKILERKAKSRQVGKEKGKYKEETI | |
Retrocopy | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRPKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
Parental | EKMQE |
EKMQE | |
Retrocopy | EKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .34 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 1 .03 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .32 RPM | 33 .90 RPM |
SRP007412_heart | 0 .18 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .12 RPM | 37 .91 RPM |
SRP007412_liver | 0 .20 RPM | 70 .06 RPM |
SRP007412_testis | 0 .23 RPM | 20 .05 RPM |