RetrogeneDB ID: | retro_amel_171 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192345.1:256889..257328(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSAMEG00000015145 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 67.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MFRRPILQVF-HQFVRRESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGE |
MF.RP.LQVF.HQFVR.ES...SSLVL.RSLN.VQLLG.VGQD.VM.QVEGKNP.TIFSLA.NEMWRS.E | |
Retrocopy | MFQRPELQVF<HQFVRHESQIPSSLVLKRSLNCVQLLGKVGQDSVMIQVEGKNPATIFSLAANEMWRSEE |
Parental | NEAYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIY-VEGKVDYGEYTDKNNVRRQATTIIADNII |
...YQ.G.VSQKTTWH..S....GLR..AY..VK.G.....VEGKV..GE.TDKNN...QA..IIA.N.. | |
Retrocopy | SGVYQTGNVSQKTTWHGMSALWSGLRHLAYH*VKRGLKLM<VEGKVGSGECTDKNNSK*QAMIIIAVNTL |
Parental | FLSDQTKEKA |
.L.DQTKEKA | |
Retrocopy | -LDDQTKEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |