RetrogeneDB ID: | retro_ptro_1695 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2B:136832613..136832919(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSPTRG00000019778 | ||
Aliases: | None | ||
Description: | Single-stranded DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:H2QVI4] |
Percent Identity: | 64.42 % |
Parental protein coverage: | 84.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGK-NPVTIFSLATNEMWRSGD-SE |
RP.LQVL.QFVR.ESE.T..L.LERS.N.V.LLG.V.Q.P..RQVEGK.N.....SLATNEMW.SG.... | |
Retrocopy | RPALQVLYQFVRCESEMTSNLFLERSMNHVQLLG*VSQAPDMRQVEGK<NIQSQYSLATNEMWESGS>KS |
Parental | VYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG |
.Y..G.VSQKTTWHRISVF.PG.RDVAY.....G | |
Retrocopy | LYRMGGVSQKTTWHRISVFQPGPRDVAYPFAENG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 24 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .08 RPM |
SRP007412_heart | 0 .00 RPM | 48 .00 RPM |
SRP007412_kidney | 0 .05 RPM | 38 .94 RPM |
SRP007412_liver | 0 .00 RPM | 44 .81 RPM |
SRP007412_testis | 0 .00 RPM | 83 .36 RPM |