RetrogeneDB ID: | retro_fcat_768 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:82875059..82875338(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSFCAG00000006568 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 75.79 % |
Parental protein coverage: | 63.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IFSLATNEMWRSGESEVYQMDLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKN |
I.S.A.NEMW.SGESE.Y.M....VSQKT.WHRISVF.PGLRDVAYQYVK...RIY.EGKVDYGEYTDKN | |
Retrocopy | IVSPAMNEMWQSGESETYRMS--NVSQKTPWHRISVF*PGLRDVAYQYVKTRARIYMEGKVDYGEYTDKN |
Parental | NVRRQATTIIADNIIFLSDQTKEKA |
NVR.QAT..I.DNI.FL.DQTK.KA | |
Retrocopy | NVRQQATINITDNILFLRDQTKDKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .55 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |