RetrogeneDB ID: | retro_itri_1490 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393507.1:1961462..1961732(-) | ||
Located in intron of: | ENSSTOG00000008563 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSSTOG00000007007 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 65.93 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MFRRPVLQVLHQFVRHESEVASSFVLERSLNRVQLLGRVGQDPVLRQAEGKNPVTIFSLATNEMWRSGES |
MF.R.VL.VLH.FVR..SE..SS.V...S....QLLGRV.QD.V.RQAEGKNPV.IFSLATN.MW.S..S | |
Retrocopy | MF*RSVLKVLHSFVRYKSEISSSLVFKISKS-LQLLGRVSQDLVVRQAEGKNPVMIFSLATNKMWQSRDS |
Parental | EEYQMGDISQKTTWHRISVFR |
..YQMGDIS...T.HR.SVFR | |
Retrocopy | KVYQMGDISLDNTQHRVSVFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |