RetrogeneDB ID: | retro_fcat_802 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:132090934..132091345(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSFCAG00000006568 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 60.14 % |
Parental protein coverage: | 92.67 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MFRRPVLQVF-HQFVRRESEIASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVT-IFSLATNEMWRSG |
MF.RP.LQV..HQFVR..S.IASSLVL.RSLN..QLLG.VGQD.VMRQVE.K...T.IFS.........G | |
Retrocopy | MFQRPELQVL<HQFVRHRSQIASSLVLRRSLNCMQLLGKVGQDSVMRQVERKKSSTIIFSSSK*DVVTRG |
Parental | ESEVYQMDLGDVSQKTTWHRISVFRPGLRDVAYQYVK-KGSRIYVEGKVDYGE-YTDKNNVRRQATTIIA |
.......D..DVSQKTTWHRISV..PG.RD.AYQ.VK.KGS...VE.KV..G...TDKNN...Q...IIA | |
Retrocopy | K*GIPIVD--DVSQKTTWHRISVLWPGRRDLAYQWVK<KGS*TDVEEKVVSGD<CTDKNNCN*QTMIIIA |
Parental | DNI |
.NI | |
Retrocopy | GNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .55 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |