Parental gene: | SSBP1, ENSFCAG00000006568 |
| Aliases: | None |
| Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
| Organism: | Cat (Felis catus) |
| Coordinates: | A2:156188753..156199250(+) |
>ENSFCAG00000006568
ATGTTTCGGAGACCTGTATTACAGGTGTTTCATCAGTTTGTAAGACGTGAGTCTGAAATAGCCAGCAGCTTGGTTCTTGA
AAGATCTCTGAACCGTGTGCAGCTCCTTGGGCGAGTGGGTCAGGACCCCGTCATGAGACAGGTGGAAGGGAAGAACCCGG
TCACAATATTTTCTCTAGCAACGAATGAGATGTGGCGGTCAGGGGAGAGTGAAGTATACCAAATGGATTTAGGTGATGTC
AGTCAAAAGACGACATGGCACAGAATATCAGTATTCCGACCAGGCCTCAGAGATGTGGCGTATCAGTATGTGAAAAAGGG
GTCCCGTATCTATGTGGAAGGGAAAGTCGACTATGGTGAATACACAGATAAAAACAATGTGAGGCGACAGGCAACAACAA
TCATAGCTGATAATATTATATTTCTGAGTGACCAGACCAAAGAAAAGGCATAG
ATGTTTCGGAGACCTGTATTACAGGTGTTTCATCAGTTTGTAAGACGTGAGTCTGAAATAGCCAGCAGCTTGGTTCTTGA
AAGATCTCTGAACCGTGTGCAGCTCCTTGGGCGAGTGGGTCAGGACCCCGTCATGAGACAGGTGGAAGGGAAGAACCCGG
TCACAATATTTTCTCTAGCAACGAATGAGATGTGGCGGTCAGGGGAGAGTGAAGTATACCAAATGGATTTAGGTGATGTC
AGTCAAAAGACGACATGGCACAGAATATCAGTATTCCGACCAGGCCTCAGAGATGTGGCGTATCAGTATGTGAAAAAGGG
GTCCCGTATCTATGTGGAAGGGAAAGTCGACTATGGTGAATACACAGATAAAAACAATGTGAGGCGACAGGCAACAACAA
TCATAGCTGATAATATTATATTTCTGAGTGACCAGACCAAAGAAAAGGCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 6 .37 RPM |
| SRP017611_kidney | 8 .55 RPM |
| SRP017611_brain | 6 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015145 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000010931 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000003885 | ortholog_one2one | 7 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013650 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000003354 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000015867 | ortholog_one2one | 15 retrogenes | |
| Dipodomys ordii | ENSDORG00000015161 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000004023 | ortholog_one2one | 4 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000010837 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000106028 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000009615 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000011526 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007133 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000022442 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000003257 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000029911 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000002361 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016661 | ortholog_one2one | 9 retrogenes | |
| Procavia capensis | ENSPCAG00000003383 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018068 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000019778 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000006221 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000012100 | ortholog_one2one | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000016488 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000007007 | ortholog_one2one | 4 retrogenes | |
| Vicugna pacos | ENSVPAG00000003679 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_fcat_439 | 89.40 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_fcat_768 | 75.79 | 63.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_fcat_802 | 60.14 | 92.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_fcat_805 | 71.14 | 99.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_fcat_1249 | 75.00 | 82.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_fcat_1565 | 74.83 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_fcat_1604 | 67.12 | 96.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_fcat_1640 | 69.44 | 93.33 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSFCAG00000006568 retrocopies