RetrogeneDB ID: | retro_dnov_1929 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_37500:7597..7891(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSDNOG00000015867 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 73.47 % |
Parental protein coverage: | 66.22 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | VRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGESEDYQMGDVSQKTT |
VR.ESEVASSLVLE.SLNRVQLLG.VGQD.VMRQ..G.NPVT.FS.A.NEM....E..DYQMG..SQKT. | |
Retrocopy | VRYESEVASSLVLEGSLNRVQLLG*VGQDSVMRQM*GENPVTVFSPAANEM*QLRENKDYQMGVGSQKTA |
Parental | WHRISVFRPGLRDVAYQYVKKGSRIYVE |
WHR.SVF.P.LR.V.YQ.VKKGS.IYVE | |
Retrocopy | WHRVSVFWPSLRAVTYQ*VKKGSQIYVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 18 .47 RPM |
SRP012922_cerebellum | 0 .00 RPM | 9 .90 RPM |
SRP012922_heart | 0 .00 RPM | 6 .96 RPM |
SRP012922_kidney | 0 .00 RPM | 16 .98 RPM |
SRP012922_liver | 0 .00 RPM | 11 .30 RPM |
SRP012922_lung | 0 .00 RPM | 17 .72 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 5 .02 RPM |
SRP012922_spleen | 0 .00 RPM | 18 .89 RPM |