RetrogeneDB ID: | retro_fcat_1565 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:79436117..79436557(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSFCAG00000006568 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 74.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MFRRPVLQVFHQFVRRESEIASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIF-SLATNEMWRSGE |
MF.RPVL.VFHQ.VR.ESEIASS...ERSLN.VQLLG.VGQDP.MR.VEGKNPVTIF.SLATNE.WRSGE | |
Retrocopy | MFQRPVLGVFHQSVRSESEIASSFDPERSLNCVQLLGTVGQDPIMR*VEGKNPVTIF<SLATNEVWRSGE |
Parental | SEVYQMDLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNI |
S.V.QM..GDVSQ.TT.HR.SVF.PGLR..AYQYVKKGSRIY..GK..YGEYT.K.NV..QATTI.A.N. | |
Retrocopy | SGVHQM--GDVSQ-TTEHRVSVFGPGLRNMAYQYVKKGSRIYMGGKLNYGEYTGKHNVGPQATTIRAGNS |
Parental | IFLSDQTKEKA |
.FL.D..KEKA | |
Retrocopy | LFLGDPIKEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .55 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |