RetrogeneDB ID: | retro_eeur_194 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_204235:199..642(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSEEUG00000010837 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 68. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | MFRRPVLQVLHQFVRHQSEVTTSLVLERSLNRVQLLG-RVGQDPVMRQVEGKNPVTIF-SMATNEMWRSG |
MF.RPVL.VL...VR.QSE.TTSLVLE.SLN.VQL.G..VGQ.PVMRQ.EGKNP.TIF.S.ATNEM.R.G | |
Retrocopy | MFQRPVLKVLG*SVRNQSEITTSLVLESSLNLVQLMG*VVGQGPVMRQIEGKNPITIF>SLATNEMSR*G |
Parental | DNEA-YQIGDISQKTTWHRISVFRPGLRDVAYQYVKKGSRIFVEGKIDYGEYTDKNNVRRQATTIIADNI |
DNE..Y..G...QKT.WHRISVF.PGLRDV.YQ.VK.G...FVE.K..Y.E.TDKNNVR.Q.T.II..N. | |
Retrocopy | DNEV>YPMGNVTQKTAWHRISVFQPGLRDVVYQ*VKNGTGMFVERKVNYSE*TDKNNVR*Q-TVIIITNN |
Parental | IFLSDQTKEK |
IFL..QTK.K | |
Retrocopy | IFLIGQTKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 13 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .82 RPM |
SRP017611_liver | 0 .00 RPM | 11 .25 RPM |