RetrogeneDB ID: | retro_fcat_1249 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:14166632..14166992(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSFCAG00000006568 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 75. % |
Parental protein coverage: | 82.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | ERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGESEVYQMDLGDVSQKTTWHRISVFRPGL |
...LNR....G.VGQDP.MRQVEGKN.VTIFSLA.NEMW.SGE...YQM..GDVSQKTTW.RI.VF.PGL | |
Retrocopy | DQRLNR-RKSGWVGQDPIMRQVEGKNLVTIFSLAMNEMWWSGETGIYQM--GDVSQKTTWCRIPVFQPGL |
Parental | RDVAYQYVKKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQTKEKA |
RD..YQYVKKGS.IY..G.VDYGEYTDK.NVR.QAT.IIADN..FLSDQTKEKA | |
Retrocopy | RDMVYQYVKKGSGIYM*GTVDYGEYTDKINVR*QATAIIADN-VFLSDQTKEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .55 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |