RetrogeneDB ID: | retro_rnor_2631 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 8:62340157..62340482(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ssbp1 | ||
Ensembl ID: | ENSRNOG00000012100 | ||
Aliases: | Ssbp1, Ssbp | ||
Description: | Single-stranded DNA-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P28042] |
Percent Identity: | 92.66 % |
Parental protein coverage: | 72.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MFRRPVLQVFRQFVRQESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGK-NPVTIFSLATNEMWRSGD |
MFRRPVLQVFRQFVRQESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGK.NPVTIFSLATNEMWRSGD | |
Retrocopy | MFRRPVLQVFRQFVRQESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGK>NPVTIFSLATNEMWRSGD |
Parental | NEAYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARI |
.E.YQM.DVSQKTTWHRISVFRPGLRDVAYQYVKK.... | |
Retrocopy | SEVYQMSDVSQKTTWHRISVFRPGLRDVAYQYVKKEGKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 5 .68 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .61 RPM |
SRP017611_liver | 0 .07 RPM | 8 .14 RPM |