RetrogeneDB ID: | retro_fcat_1640 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:65941567..65941980(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSFCAG00000006568 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 69.44 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | HQFVRRESEIASSLVL-ERSLNRVQLLGRVGQDPVMRQVE-GKNPVTIFSLATNEMWRSGESEVYQMDLG |
HQFVR.ES.IASSLVL..RSLN..QLLG.V.QD..MRQVE.GK.....FSL..NEMW...ESE.YQ...G | |
Retrocopy | HQFVRHESKIASSLVL<QRSLNHSQLLG*VSQDLIMRQVE>GKTQ-PMFSLVMNEMWQLRESETYQV--G |
Parental | DVSQKT-TWHRISVFRPGLRDVA-YQYVKKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQT |
DV...T..WHRISV..PGLRD.A.YQ.VK....IY.EGKVDYGEYTDKNNVR.QATTI.AD.IIFLSDQT | |
Retrocopy | DVG*DT>NWHRISVL*PGLRDLA>YQSVKREPQIYAEGKVDYGEYTDKNNVRGQATTIVADDIIFLSDQT |
Parental | KEKA |
K.KA | |
Retrocopy | KDKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .55 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |