RetrogeneDB ID: | retro_amel_841 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192678.1:645287..645733(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSAMEG00000002925 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:F2X207] |
Percent Identity: | 72. % |
Parental protein coverage: | 59.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEK-RMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLT |
.KLNISFPATGCQKLIEVD.E.KL.T.Y....MATEV.A..L.EEWKGY.V...GGNDKQGFPMKQGVLT | |
Retrocopy | LKLNISFPATGCQKLIEVDSECKLCTHYKA<DMATEVGANTLDEEWKGYMV*VGGGNDKQGFPMKQGVLT |
Parental | HGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRAS |
HG.V.L.LSKG.SCY.PRRT.ERK.KSV.GCIVDA.LS.LN..IVKKGEK.I..LT..TVP..L.PK.A. | |
Retrocopy | HGCVHLQLSKGNSCYKPRRTRERKGKSVWGCIVDASLSALNFIIVKKGEKGISRLTEMTVPHCLEPKIAR |
Parental | RIRKLFNLSK |
R..KLFNL.K | |
Retrocopy | RTHKLFNLLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |